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The extent of unpreparedness for overseas combat varied considerably in the two military services. In the decade preceding the war, the Navy, thanks to the efforts of career officers such as Rear Adm. Stephen B. Luce, Capt. Alfred T. Mahan, and Benjamin Tracy, Secretary of the Navy in Harrison's administration, as well as to the willingness of Congress to appropriate the necessary funds, had carried out an extensive construction and modernization program. The historical writings of Alfred T. Mahan were particularly influential in establishing the framework of a global, blue-water fleet focused on the dominance of the Navy, the establishment of refueling bases, and the aggressive protection of commerce. During the same period, the Naval War College at Newport, Rhode Island (established in 1885 through the efforts of Admiral Luce), had provided the Navy with a strong corps of professional officers trained in the higher levels of warfare and strategy, including the far-ranging doctrines of Mahan.
The Army was not so fortunate. During the quarter of a century preceding 1898, the Army averaged only about 26,000 officers and men, most of whom were scattered widely across the country in company- and battalion-size organizations. Consequently, the Army rarely had had an opportunity for training and experience in the operation of units larger than a regiment. Moreover, the service lacked a mobilization plan, a well-knit higher staff, and experience in carrying on joint operations with the Navy. The National Guard was equally ill prepared. Though the Guard counted over 100,000 members, most units were poorly trained and inadequately equipped. Thus, while most regulars were armed with Krag-Jorgensen rifles firing smokeless powder cartridges, most guardsmen were still equipped with Springfield rifles that could fire only black powder ammunition.